Correction to "Evaluating the Catalytic Contribution from the Oxyanion Hole in Ketosteroid Isomerase".
نویسندگان
چکیده
W report that the kinetic constants for several mutants of ketosteroid isomerase (KSI) from our 2011 publication are incorrect. Jason Schwans and Daniel Herschlag, the paper’s first and corresponding authors, take full responsibility for and deeply regret these errors. Based on extensive control experiments, the errors likely arose from low levels (∼0.1−1%) of contaminating wild-type enzyme introduced during fast protein liquid chromatography (FPLC) purification; this contamination can be avoided by stringent washing of the FPLC injection loop and other plumbing with base (Supplemental text). The main conclusions of the Communication are not affected by these errors. For clarity, we list below the central conclusions from our work and how they are or are not altered by these errors. Also, we remeasured kinetic constants from two papers we published around the same time and found all of those results to be fully reproducible (Supplemental Table 1). All remeasured values are presented as Supporting Information and directly compared to those from the prior work (Supplemental Tables 2−5). Additional measurements were made with a faster-reacting substrate and with several additional mutant enzymes to extend these measurements and comparisons in light of the new findings (Supplemental Tables 6 and 7). Inhibition constants were determined for several mutants to provide evidence that the new kinetic constants correspond to the mutant activities and not wild-type contamination (Supplemental Tables 8 and 9). Prior and Updated Conclusions: 1. The oxyanion hole catalytic contribution is overestimated by so-called conservative mutations. This conclusion holds.
منابع مشابه
Evaluating the catalytic contribution from the oxyanion hole in ketosteroid isomerase.
Prior site-directed mutagenesis studies in bacterial ketosteroid isomerase (KSI) reported that substitution of both oxyanion hole hydrogen bond donors gives a 10(5)- to 10(8)-fold rate reduction, suggesting that the oxyanion hole may provide the major contribution to KSI catalysis. But these seemingly conservative mutations replaced the oxyanion hole hydrogen bond donors with hydrophobic side c...
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متن کاملBIOPHYSICS. Comment on "Extreme electric fields power catalysis in the active site of ketosteroid isomerase".
Fried et al. (Reports, 19 December 2014, p. 1510) demonstrated a strong correlation between reaction rate and the carbonyl stretching frequency of a product analog bound to ketosteroid isomerase oxyanion hole mutants and concluded that the active-site electric field provides 70% of catalysis. Alternative comparisons suggest a smaller contribution, relative to the corresponding solution reaction...
متن کاملComment on “Extreme electric fields power catalysis in the active site of ketosteroid isomerase”
Fried et al. (Reports, 19 December 2014, p. 1510) demonstrated a strong correlation between reaction rate and the carbonyl stretching frequency of a product analog bound to ketosteroid isomerase oxyanion hole mutants and concluded that the active-site electric field provides 70% of catalysis. Alternative comparisons suggest a smaller contribution, relative to the corresponding solution reaction...
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ورودعنوان ژورنال:
- Journal of the American Chemical Society
دوره 138 24 شماره
صفحات -
تاریخ انتشار 2016